About

Jerjes Aguirre-Chavez is a Data Science PhD student at the Halıcıoğlu Data Science Institute, University of California, San Diego, co-advised by Professor Albert Hsiao (AiDA Lab) and Professor Bradley Voytek (Voytek Lab). His research focuses on vision-language models (VLMs) for radiology and neuroscience, with particular interest in clinical alignment and workflow enhancement — building models that hold up to the demands of real clinical and scientific use, not just benchmark performance. Prior to his PhD, Jerjes worked as a Data Scientist II at ClimateAi, focusing on climate risk management, hurricane forecasting, and flood forecasting, and as a Research Trainee at the Fetal-Neonatal Neuroimaging and Developmental Science Center (Boston Children’s Hospital / Harvard Medical School), applying deep learning to fetal brain age prediction.

Interests
  • Vision-Language Models
  • Clinical AI Alignment
  • Radiology & Neuroscience
  • Clinical Workflow Enhancement
Education
  • PhD in Data Science, 2029 (expected)

    University of California, San Diego

  • MSc in Data Science, 2026

    University of California, San Diego

  • BSc in Engineering Physics, 2022

    Tecnológico de Monterrey

News

Experience

 
 
 
 
 
Graduate Student Researcher
September 2024 – Present La Jolla, CA
  • Developing vision-language models to detect and interpret findings in radiology imaging, with the AiDA Lab (Prof. Albert Hsiao).
  • Building vision-language models for scientific discovery from neuroscience literature, with the Voytek Lab (Prof. Bradley Voytek).
  • Focusing on clinical alignment and workflow enhancement to make these models practical for real diagnostic and research settings.
 
 
 
 
 
Data Scientist II
February 2024 – September 2024 Remote
  • Designed custom dashboards for clients tracking wildfire, hurricane, and agronomic risk.
  • Built algorithms to aggregate climate projection data for hydrological basins, improving data accuracy and usability.
  • Wrote climate risk analysis report guidelines that gave stakeholders clear, actionable insights for decision-making.
 
 
 
 
 
Data Scientist I
January 2023 – February 2024 Remote
  • Built client-specific datasets to assess climate risks such as pests, disease, sunshine hours, and heat stress.
  • Migrated and adapted the codebase from Google Cloud to Amazon Web Services with no disruption to service.
  • Developed algorithms to post-process high-resolution global climate projection variables, improving compute efficiency.
 
 
 
 
 
Software Engineer
August 2022 – January 2023 Remote
  • Built NLP algorithms to infer tax rules across different countries and airlines.
  • Managed source control with Git to keep the codebase reliable across a collaborative team.
  • Built and maintained SQL databases for accurate, available tax data.

Selected Publications

For the complete list of publications, see my Google Scholar profile.

(2026). NeuroVLM: A generative vision-language framework for human neuroimaging. bioRxiv.

PDF DOI

(2025). Artificial Intelligence in Cardiovascular MRI: From Imaging to Biomechanics and Diagnosis. Journal of Thoracic Imaging.

PDF DOI

(2025). Deep Learning–based Brain Age Prediction Using MRI to Identify Fetuses with Cerebral Ventriculomegaly. Radiology: Artificial Intelligence.

PDF Cite DOI

Contact

Hi there! I’m always excited to chat about research, collaborations, or talk about grad school in general. Whatever’s on your mind, feel free to drop me a line— I’m here to help and share ideas.